Closed johnne closed 1 year ago
I installed atlas 2.15.0 from bioconda as per the instructions when proceeded with:
2.15.0
atlas init data/raw/files
However I'm getting this error:
FileNotFoundError: [Errno 2] No such file or directory: '/lib/python3.10/site-packages/atlas/../workflow/config/template_config.yaml'
(where <my_conda_prefix> is the path to the conda environment with atlas).
<my_conda_prefix>
The template is actually at <my_conda_prefix>/lib/python3.10/site-packages/atlas/workflow/config/template_config.yaml.
<my_conda_prefix>/lib/python3.10/site-packages/atlas/workflow/config/template_config.yaml
No big issue as I could copy the template from its actual location and proceed from there, but thought I should file the issue all the same.
Enjoying the rest of atlas so far!
btw, changing line 198 of make_config.py to:
make_config.py
), "workflow/config/template_config.yaml"
fixes the issue for me.
Thank you for noticing.
I installed atlas
2.15.0
from bioconda as per the instructions when proceeded with:However I'm getting this error:
(where
<my_conda_prefix>
is the path to the conda environment with atlas).The template is actually at
<my_conda_prefix>/lib/python3.10/site-packages/atlas/workflow/config/template_config.yaml
.No big issue as I could copy the template from its actual location and proceed from there, but thought I should file the issue all the same.
Enjoying the rest of atlas so far!