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metagenome-atlas / atlas

ATLAS - Three commands to start analyzing your metagenome data
https://metagenome-atlas.github.io/
BSD 3-Clause "New" or "Revised" License
368 stars 97 forks source link

Genome dereplication using skani #663

Closed SilasK closed 1 year ago

SilasK commented 1 year ago

This is almost ready.

Instead of using dRep which uses mash and then FastANI,

using skani seems a better alternative.

mladen5000 commented 1 year ago

Just saw in case its of interest - https://github.com/althonos/pyskani