metagenome-atlas / atlas

ATLAS - Three commands to start analyzing your metagenome data
https://metagenome-atlas.github.io/
BSD 3-Clause "New" or "Revised" License
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Error in rule download_gtdb #673

Closed mladen5000 closed 1 year ago

mladen5000 commented 1 year ago

Here is the relevant log output:

--2023-06-28 20:09:31--  https://data.gtdb.ecogenomic.org/releases/release214/214.0/auxillary_files/gtdbtk_r214_data.tar.gz
Resolving data.gtdb.ecogenomic.org (data.gtdb.ecogenomic.org)... 203.101.230.53
Connecting to data.gtdb.ecogenomic.org (data.gtdb.ecogenomic.org)|203.101.230.53|:443... connected.
ERROR: cannot verify data.gtdb.ecogenomic.org's certificate, issued by ‘/C=US/O=Let's Encrypt/CN=R3’:
  Issued certificate has expired.
To connect to data.gtdb.ecogenomic.org insecurely, use `--no-check-certificate'.

Atlas version 2.17 Additional context Adding --no-check-certificate resolves the issue.

SilasK commented 1 year ago

Fixed by your PR #674