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metagenome-atlas / atlas

ATLAS - Three commands to start analyzing your metagenome data
https://metagenome-atlas.github.io/
BSD 3-Clause "New" or "Revised" License
364 stars 97 forks source link

Public init v2 #712

Closed mortonjt closed 5 days ago

mortonjt commented 7 months ago

This provides minor update to the init-public script that bypasses the need for the NCBI trace by instead using the SraRunTable.txt file as direct input (which can be downloaded from the SRA website via clicking the Send to Run Selector, followed by the Metadata buttons.

EDIT: Created this pull request a bit premature XD -- this isn't intended to be merged in, but rather provide a workaround to the public-init issue.

SilasK commented 5 days ago

Thank you for the feature. I made a new working version in #736