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metagenomics / MeRaGENE

MIT License
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Update a Pipeline #147

Open pbelmann opened 9 years ago

pbelmann commented 9 years ago

At the moment a user would have to run two commands in order to update the pipeline. This is because we are storing our vendor packages (python, virtualenv) in nextflow assets directory. Therefore a simple nextflow pull metagenomics/MeRaGENE does not work because it reports that it contains uncommited changes:

nextflow pull metagenomics/MeRaGENE
Checking metagenomics/MeRaGENE ...
metagenomics/MeRaGENE contains uncommitted changes -- cannot pull from repository

I believe there should be an easier way for updating. Maybe we should ask Paolo