[73/c51673] NOTE: Process `wPipeline:_wAggregate:wCooccurrenceList:_wCooccurrence:pBuildNetwork (1)` terminated with an error exit status (1) -- Execution is retried (1)
[e8/886ba9] NOTE: Process `wPipeline:_wAggregate:wCooccurrenceList:_wCooccurrence:pBuildNetwork (1)` terminated with an error exit status (1) -- Execution is retried (2)
[21/c41642] NOTE: Process `wPipeline:_wAggregate:wCooccurrenceList:_wCooccurrence:pBuildNetwork (1)` terminated with an error exit status (1) -- Execution is retried (3)
[dd/4ef141] NOTE: Process `wPipeline:_wAggregate:wCooccurrenceList:_wCooccurrence:pBuildNetwork (1)` terminated with an error exit status (1) -- Error is ignored
Error in .command.err:
Unable to find image 'pbelmann/cooccurrence:0.1.6' locally
0.1.6: Pulling from pbelmann/cooccurrence
2dffa903b83a: Pulling fs layer
10f3fdbe572d: Pulling fs layer
663fe05835c5: Pulling fs layer
7a88b43f1097: Pulling fs layer
ff9b12da32ab: Pulling fs layer
bd3fedd8743f: Pulling fs layer
e936c1da0786: Pulling fs layer
929d6617a74f: Pulling fs layer
15f2d2475199: Pulling fs layer
f00f2e52599a: Pulling fs layer
b5c4c9c7ba94: Pulling fs layer
e936c1da0786: Waiting
929d6617a74f: Waiting
15f2d2475199: Waiting
ff9b12da32ab: Waiting
7a88b43f1097: Waiting
bd3fedd8743f: Waiting
b5c4c9c7ba94: Waiting
10f3fdbe572d: Verifying Checksum
10f3fdbe572d: Download complete
2dffa903b83a: Verifying Checksum
2dffa903b83a: Download complete
ff9b12da32ab: Verifying Checksum
ff9b12da32ab: Download complete
663fe05835c5: Verifying Checksum
663fe05835c5: Download complete
7a88b43f1097: Verifying Checksum
7a88b43f1097: Download complete
2dffa903b83a: Pull complete
10f3fdbe572d: Pull complete
929d6617a74f: Verifying Checksum
929d6617a74f: Download complete
663fe05835c5: Pull complete
7a88b43f1097: Pull complete
ff9b12da32ab: Pull complete
15f2d2475199: Verifying Checksum
15f2d2475199: Download complete
e936c1da0786: Verifying Checksum
e936c1da0786: Download complete
b5c4c9c7ba94: Verifying Checksum
b5c4c9c7ba94: Download complete
f00f2e52599a: Verifying Checksum
bd3fedd8743f: Verifying Checksum
bd3fedd8743f: Download complete
bd3fedd8743f: Pull complete
e936c1da0786: Pull complete
929d6617a74f: Pull complete
15f2d2475199: Pull complete
f00f2e52599a: Pull complete
b5c4c9c7ba94: Pull complete
Digest: sha256:02137fb34232700bbeb9e682b2e5eb83bd289cc177cd2f7c53946691ce1f57fb
Status: Downloaded newer image for pbelmann/cooccurrence:0.1.6
WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
Attaching package: ‘dplyr’
The following objects are masked from ‘package:stats’:
filter, lag
The following objects are masked from ‘package:base’:
intersect, setdiff, setequal, union
Attaching package: ‘igraph’
The following objects are masked from ‘package:dplyr’:
as_data_frame, groups, union
The following objects are masked from ‘package:stats’:
decompose, spectrum
The following object is masked from ‘package:base’:
union
Attaching package: ‘SpiecEasi’
The following object is masked from ‘package:igraph’:
make_graph
Error in colSums(trimmed_mean_wide_inverted == 0) :
'x' must be an array of at least two dimensions
Calls: run_main -> colSums
Execution halted
Error in console:
Error in .command.err:
Config:
Commandline:
nextflow run main.nf -work-dir workdir -profile standard -entry wPipeline -params-file ../fullPipeline.yml -resume