metagenomics / metagenomics-tk

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feature(annotation): Add GTDB MMesqs2-Taxonomy database #323

Closed bosterholz closed 1 year ago

bosterholz commented 1 year ago

Please provide a description for this PR

This PR adds the newest GTDB database as an additional database for MMseqs2-Taxonomy annotations. Also a new flag to (not) use the MMseqs2-Taxonomy RAM mode is implemented.

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Before merge:

pbelmann commented 1 year ago

I agree with all changes. However, based on this PR I implemented in PR #325 a few modifcations to make it more consistent with gtdbtk and EMGB. Let's continue the review in PR #325.

pbelmann commented 1 year ago

Merged with PR #325