If bin refinement is not necessary, then skip computation of hmmsearch and prodigal.
Scaling in the annotation part was blocked so far using the groupTuple operator. Now it uses the expected number of fasta files per sample to unblock streaming.
cplex docker image is now build without cache
Fragment recruitment can now be cache using Nextflow fair directive.
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This PR introduces the following fixes:
PR review guidelines
Thank you for submitting this PR.
Before merge:
The PR must be reviewed by one of the team members.
Please check if anything in the Readme must be adjusted, or added (development-setup, production-setup, user-guide).
PRs with new modules or workflow interfaces must include tests according to the developer guidelines.
The new code is readable, well commented and should adhere to our developer guidelines.
Before merging it must be checked if a squash of commits is required.