This PR enabled the use of Nextflows secrets feature. Instead of using one secrets mechanism in the aws.confg and a different one for s5cmd, it is now possible to set secrets uniformly.
Example:
nextflow secrets set S3_kegg_ACCESS XXXXXXXXXXXXXXX
PR review guidelines
Thank you for submitting this PR.
Before merge:
The PR must be reviewed by one of the team members.
Please check if anything in the Readme must be adjusted, or added (development-setup, production-setup, user-guide).
PRs with new modules or workflow interfaces must include tests according to the developer guidelines.
The new code is readable, well commented and should adhere to our developer guidelines.
Before merging it must be checked if a squash of commits is required.
This PR enabled the use of Nextflows secrets feature. Instead of using one secrets mechanism in the aws.confg and a different one for s5cmd, it is now possible to set secrets uniformly.
Example:
PR review guidelines
Thank you for submitting this PR.
Before merge:
The PR must be reviewed by one of the team members.
Please check if anything in the Readme must be adjusted, or added (development-setup, production-setup, user-guide).
PRs with new modules or workflow interfaces must include tests according to the developer guidelines.
The new code is readable, well commented and should adhere to our developer guidelines.
Before merging it must be checked if a squash of commits is required.