This PR introduces a filter which removes reads identitified as potentially human.
This is implemented for illumina and nanopore datasets and is based on the NCBI SRA human scrubber:
https://github.com/ncbi/sra-human-scrubber
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Please check if anything in the Readme must be adjusted, or added (development-setup, production-setup, user-guide).
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This PR introduces a filter which removes reads identitified as potentially human. This is implemented for illumina and nanopore datasets and is based on the NCBI SRA human scrubber: https://github.com/ncbi/sra-human-scrubber
PR review guidelines
Thank you for submitting this PR.
Before merge:
The PR must be reviewed by one of the team members.
Please check if anything in the Readme must be adjusted, or added (development-setup, production-setup, user-guide).
PRs with new modules or workflow interfaces must include tests according to the developer guidelines.
The new code is readable, well commented and should adhere to our developer guidelines.
Before merging it must be checked if a squash of commits is required.