Add functional output - Githubissues

metagenopolis / meteor

Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform specie level taxonomic assignments and functional analysis.

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Add functional output #48

Closed fthirion89 closed 4 months ago

fthirion89 commented 5 months ago

List of functional outputs that should be generated:

sum of genes for kegg, dban and mustard (curretnly, onlt mustard)
sum of msps for kegg, dbcan and mustard (currently, only dbcan)

Line 639 and 640 of profiler.py: Change ["mustard"] with ["mustard", "kegg", "dbcan"] Change ["dbcan] with ["mustard", "kegg", "dbcan"]

Probably test associated with the function execute() should be updated.

aghozlane commented 4 months ago

Done!