metagentools GraphBin issues

metagentools / GraphBin

✨🧬 Refined binning of metagenomic contigs using assembly graphs

https://graphbin.readthedocs.io/en/latest/

BSD 3-Clause "New" or "Revised" License

89 stars 7 forks source link

issues

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GIT: Merge changes from master to develop

#52 Vini2 closed 2 months ago
1
DEV: separate main code from `__init__.py`

#51 Vini2 closed 2 months ago
0
utils/parsers/*.py/write_output is not OS agnostic

#50 khiron opened 2 months ago
0
GIT: Merge Master changes

#49 Vini2 closed 3 months ago
0
Make it compatible with assembly graphs coming from other assembly software

#48 amanzanom opened 3 months ago
1
Bump jinja2 from 3.1.3 to 3.1.4 in /docs

#47 dependabot[bot] closed 3 months ago
0
Running flye assemblies and getting error wanting contigs.paths file for spades

#46 emilyjunkins closed 2 months ago
2
Bump jinja2 from 3.0.3 to 3.1.3 in /docs

#45 dependabot[bot] closed 6 months ago
0
Merge changes from develop

#44 Vini2 closed 11 months ago
0
Please depend on 'igraph' instead of 'python-igraph' on PyPI

#43 szhorvat closed 1 year ago
2
GIT: Merge changes on branches

#42 Vini2 closed 1 year ago
0
GIT: Merge changes on branches

#41 Vini2 closed 1 year ago
0
GIT: Merge develop to master

#40 Vini2 closed 1 year ago
0
GIT: Merge develop to master

#39 Vini2 closed 1 year ago
1
link disappeared

#38 htaohan closed 1 year ago
3
ENH: Convert to use `click`

#37 Vini2 closed 1 year ago
0
Starting from a failed point

#36 tarunaaggarwal opened 1 year ago
0
How to run fastg2gfa?

#35 tarunaaggarwal closed 1 year ago
1
DOC: update requirements.txt for docs

#34 Vini2 closed 2 years ago
1
BUG: Validate args.paths check for Flye input

#33 Vini2 closed 1 year ago
0
Create CODE_OF_CONDUCT.md

#32 Vini2 closed 2 years ago
1
update docs

#30 GavinHuttley closed 2 years ago
0
Prep for PyPI release

#29 GavinHuttley closed 2 years ago
3
DEV: replace all biopython useage with cogent3

#28 GavinHuttley closed 2 years ago
2
TST: Setup nox testing

#27 Vini2 opened 2 years ago
0
Speedup final file write process

#26 Vini2 closed 2 years ago
0
Change software license

#25 Vini2 closed 2 years ago
0
using pytest fixtures for cleaning up test output directories

#24 GavinHuttley closed 2 years ago
0
useful helper function for testing cli apps

#23 GavinHuttley closed 2 years ago
0
Setup test suit

#22 Vini2 closed 2 years ago
0
Fix script attributes and update contributors

#21 Vini2 closed 2 years ago
0
project refactor to improve portability

#20 GavinHuttley closed 2 years ago
0
qusetion of score

#19 mant-ux closed 10 months ago
1
About the weights between two contigs

#18 JLUVicent closed 2 years ago
2
SPAdes-MaxBin2 bins with renamed contigs

#17 nvpatin closed 2 years ago
2
Can GraphBin be used with a co-binning approach?

#16 Laura-Alex closed 10 months ago
2
Conda release

#15 vinisalazar closed 2 years ago
5
ENH: Integrate co-assembly coverage

#14 Vini2 closed 2 months ago
0
ERROR - Please make sure that you have provided the correct assembler type and the correct path to the binning result file in the correct format.

#13 jolespin closed 3 years ago
12
[Feature Request] Multiple binning input options

#12 jolespin closed 2 months ago
3
Confused with binning output file

#11 FilipeMatteoli closed 3 years ago
1
Threads option for GraphBin

#10 ashwinssudarshan opened 4 years ago
1
TypeError & Exception with spades/MaxBin2 files

#9 michaelwoodworth closed 4 years ago
2
Suggestion for prepResult.py

#8 apcamargo closed 4 years ago
3
graphbin_SPAdes.py path and ModuleNotFoundError: No module named 'igraph'

#7 michaelwoodworth closed 4 years ago
3
Modular

#6 alienzj closed 4 years ago
1
set executable permissions

#5 alienzj closed 4 years ago
0
GraphBin won't work with MEGAHIT graph

#4 apcamargo closed 4 years ago
9
change shebang path

#3 telatin closed 4 years ago
1
Feature request - long read assembly graphs

#2 susheelbhanu closed 4 years ago
6