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metagentools / GraphBin2

☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs
https://graphbin2.readthedocs.io/en/latest/
BSD 3-Clause "New" or "Revised" License
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Cannot find gfa2fasta.py #11

Closed lewhiteside closed 4 months ago

lewhiteside commented 1 year ago

Hi there, Im fairly new to running python scripts so apologies if I have missed something obvious.

I have installed GraphBin2 by first downloading GraphBin2 v1.1, unzipping the file and moving into the GraphBin2 directory. I then ran the following commands: 

conda env create -f environment.yml
conda activate graphbin2

Since I am using metaflye to generate contigs, I ran :

python gfa2fasta.py -h

However, I get the following error message:

python: can't open file '/usr/bin/gfa2fasta.py': [Errno 2] No such file or directory

Could someone please help by pointing me in the direction of where I am going wrong? Thank you in advance!

Vini2 commented 1 year ago

Helllo,

I’ll get back to you soon after the holidays!

Thanks!

Vini2 commented 4 months ago

gfa2fasta is no longer available as GraphBin2 now supports original contigs from Flye.

Closing this issue.