Feature Request: Re-output contigs to fasta according to new bin assignments?

metagentools / GraphBin2

☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs

https://graphbin2.readthedocs.io/en/latest/

BSD 3-Clause "New" or "Revised" License

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Feature Request: Re-output contigs to fasta according to new bin assignments? #14

Closed colin-heberling closed 3 months ago

colin-heberling commented 1 year ago

Most initial binning tools output the contigs to different fasta files, one file per bin. Graphbin2 provides the new bin assignments, but does not re-output contigs based on the new assignments. It would be great if it did, so that the user doesn't have to do extra work to do so.

Vini2 commented 3 months ago

Hi @colin-heberling,

GraphBin2 now outputs FASTA files for each bin, including the sequences assigned to multiple bins. Feel free to give it a try.

Closing this issue.