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metagentools / MetaCoAG

🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs
https://metacoag.readthedocs.io/en/stable/
GNU General Public License v3.0
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Dataset query #12

Closed mant-ux closed 2 years ago

mant-ux commented 2 years ago

Hello, do you have time to publish megahit based datasets? At present, there are spades on the website. Thank you very much!

Vini2 commented 2 years ago

Hello @mant-ux,

I'm currently testing MetaCoAG on MEGAHIT assemblies of all the datasets used in the preprint. I will add them once I have finished testing and let you know.

Thank you for your understanding!

Best regards, Vijini

mant-ux commented 2 years ago

@Vini2 Thank you very much for your reply! Can you answer another question for me?

More than 42000 contigs were spliced from your Sharon18 dataset in graphbin by spades, but there were 37000 contigs in the Sharon18 dataset of this method. I compared the length of 78 and found that they were also inconsistent. Is this caused by the spades software version? I don't understand. thank you!

Best regards，

Vini2 commented 2 years ago

Hello @mant-ux,

The two assemblies used in GraphBin and MetaCoAG are different. Different SPAdes versions were used and mainly, different k values were used for the assembly. Hope this clears the confusion.

Thank you!