DEV: port to use cogent3 sequence parsing / writing

metagentools / MetaCoAG

🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs

https://metacoag.readthedocs.io/en/stable/

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DEV: port to use cogent3 sequence parsing / writing #46

Open GavinHuttley opened 5 months ago

GavinHuttley commented 5 months ago

the MetaCoAG / tests / data / 5G_metaspades /assembly_graph_with_scaffolds.gfa as one demo, the only value of interest is the Node ID (which is the second field on the line)