Using results from metaSPAdes

metagentools / MetaCoAG

🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs

https://metacoag.readthedocs.io/en/stable/

GNU General Public License v3.0

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Closed jhCha1994 closed 2 years ago

jhCha1994 commented 2 years ago

Hello, @Vini2 .

I am currently trying to use MetaCoAG with results of the metaSPAdes.

When I run metaSPAdes with default settings, the output folder contains contigs.fasta and scaffolds.fasta.

Which file should I use for MetaCoAG?

Thank You!

Vini2 commented 2 years ago

Hello @jhCha1994,

I'm extremely sorry for getting back late to you.

You can use any of these two files. Please make sure to use the corresponding .paths file (contigs.paths or scaffolds.paths).

Hope this helps.

Thank you!

jhCha1994 commented 2 years ago

It works now ! Thank you for the reply!