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metamaden / recountmethylation

Utilities to access and analyze harmonized databases of public DNAm arrays from GEO.
https://recount.bio/data/
9 stars 2 forks source link

R CMD CHECK 1E 2W #14

Closed metamaden closed 4 years ago

metamaden commented 4 years ago

Get Status: 1 ERROR, 2 WARNINGs

Currently using the following shellscript:

#!/usr/bin/env bash
ghpath='/Users/maden/Documents/GitHub/'
libname='recountmethylation'
libpath=$ghpath$libname
# read version from DESCRIPTION
sed '2q;d' $libpath'/DESCRIPTION'
vers=$(sed '2q;d' $libpath'/DESCRIPTION')
vf=${vers:9}
tarpath=$libpath'_0.1.1.tar.gz'
# Do R commands
R CMD BUILD $libpath
R CMD CHECK $tarpath
metamaden commented 4 years ago

1 warning left after latest commit.

Updated shellscript:

#!/usr/bin/env bash
ghpath='/Users/maden/Documents/GitHub/'
libname='recountmethylation'
libpath=$ghpath$libname
# read version from DESCRIPTION
sed '2q;d' $libpath'/DESCRIPTION'
vers=$(sed '2q;d' $libpath'/DESCRIPTION')
vf=${vers:9}
tarpath=$libpath'_'$vf'.tar.gz'
# Do R commands
cd Documents/GitHub
R CMD INSTALL $libpath
R CMD BUILD $libpath
R CMD CHECK $tarpath
metamaden commented 4 years ago

Returns with Status: OK. Closing this issue