Closed theandyb closed 2 years ago
My understanding now is that remethdb_h5se-gm_hm450k_0-0-2_1607018051 is the newest version of the database, and that the function grabs the latest version by default; it seems to ignore the namematch
parameter (quick look at the function seems to indicate that it isn't used when actually downloading the database?)
I might have misunderstood the purpose of the namematch
parameter
Apologies for my delay in writing. I think the documentation for the namematch parameter could be improved, so I have made a note to update that documentation. Thanks for raising this issue.
I'm attempting to go work through the example analyses, and the documentation refers to the user guide for instructions on how to obtain these. From my understanding, I should run the function
getdb_h5se_gm(namematch = "remethdb-h5se_gm_0-0-1_1590090412")
to get the first dataset, but when I run this it downloads the remethdb_h5se-gm_hm450k_0-0-2_1607018051 directory instead of the requested remethdb-h5se_gm_0-0-1_1590090412. Is this correct behavior for this function, or am I using the function incorrectly? (if the latter, it would be helpful for the correct code to be added to recountmethylation_data_analyses.Rmd)