search

metamaden / recountmethylation

Utilities to access and analyze harmonized databases of public DNAm arrays from GEO.
https://recount.bio/data/
9 stars 2 forks source link

pwrEWAS_itable() not found #23

Open fearlinger opened 2 months ago

fearlinger commented 2 months ago

Dear Sean, it seems to me that the revised pwrEWAS function has been removed from the location that has been given in the vignette. I can neither source it from R, nor reach it via my webbrowser.

revised_function_url <- paste0("https://github.com/metamaden/pwrEWAS/", "blob/master/inst/revised_functions/pwrEWAS_revised.R?raw=TRUE") devtools::source_url(revised_function_url) Error in devtools::source_url(revised_function_url) : Not Found (HTTP 404). Error: [ENOENT] Failed to remove '/tmp/RtmpOYSkKg/file60a8925d4821e': no such file or directory

Would you be able to fix that (or am I doing something wrong)?

Many thanks and best regards Klemens

metamaden commented 2 weeks ago

Hi Klemens,

Thank you for reporting this issue, and I apologize for the inconvenience.

The pwrEWAS_itable() function can now be accessed as a gist rather than a standalone package/repo. The gist is available here, and using the following from an active R session should allow you to access the function:

devtools::source_gist("https://gist.github.com/metamaden/953b128c230e32ef1beecbc2695e93c1")

I will update the power analysis vignette accordingly, and changes should appear in the Bioconductor development branch soon.

Thank you for your patience, and please let me know if you have any further questions.

Best regards,

Sean