metasnv-tool / metaSNV

MetaSNV, a metagenomic SNV calling pipeline.
http://metasnv.embl.de/
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Error running metaSNV.py #11

Open ghost opened 1 year ago

ghost commented 1 year ago

$ metaSNV.py output_metaSNV/ all_samples metaSNV_db Printing details in output_metaSNV/cov/A0004.bam.cov.detail! Probably really good coverage, since variables overrun! That's a big sum: 142... munmap_chunk(): invalid pointer Printing details in output_metaSNV/cov/A0005.bam.cov.detail! Probably really good coverage, since variables overrun! That's a big sum: 203... munmap_chunk(): invalid pointer Printing details in output_metaSNV/cov/A0008.bam.cov.detail! Probably really good coverage, since variables overrun! That's a big sum: 277... munmap_chunk(): invalid pointer Printing details in output_metaSNV/cov/A0012.bam.cov.detail! Probably really good coverage, since variables overrun! That's a big sum: 281... munmap_chunk(): invalid pointer Printing details in output_metaSNV/cov/A0013.bam.cov.detail! Probably really good coverage, since variables overrun! That's a big sum: 287... munmap_chunk(): invalid pointer Printing details in output_metaSNV/cov/A0014.bam.cov.detail! Probably really good coverage, since variables overrun! That's a big sum: 849... Probably really good coverage, since variables overrun! That's a big sum: 282... munmap_chunk(): invalid pointer Printing details in output_metaSNV/cov/A0019.bam.cov.detail! Probably really good coverage, since variables overrun! That's a big sum: 292... munmap_chunk(): invalid pointer Printing details in output_metaSNV/cov/A0021.bam.cov.detail! Probably really good coverage, since variables overrun! That's a big sum: 276... munmap_chunk(): invalid pointer Printing details in output_metaSNV/cov/A0029.bam.cov.detail! Probably really good coverage, since variables overrun! That's a big sum: 286... munmap_chunk(): invalid pointer Printing details in output_metaSNV/cov/A0032.bam.cov.detail! Probably really good coverage, since variables overrun! That's a big sum: 116... munmap_chunk(): invalid pointer Printing details in output_metaSNV/cov/A0036.bam.cov.detail! Probably really good coverage, since variables overrun! That's a big sum: 275... munmap_chunk(): invalid pointer Printing details in output_metaSNV/cov/A0037.bam.cov.detail! Probably really good coverage, since variables overrun! That's a big sum: 263... Probably really good coverage, since variables overrun! That's a big sum: 273... munmap_chunk(): invalid pointer Printing details in output_metaSNV/cov/A0038.bam.cov.detail! Probably really good coverage, since variables overrun! That's a big sum: 282... Probably really good coverage, since variables overrun! That's a big sum: 283... munmap_chunk(): invalid pointer Printing details in output_metaSNV/cov/A0040.bam.cov.detail! Probably really good coverage, since variables overrun! That's a big sum: 288... munmap_chunk(): invalid pointer Printing details in output_metaSNV/cov/A0041.bam.cov.detail! Printing details in output_metaSNV/cov/A0049.bam.cov.detail! Probably really good coverage, since variables overrun! That's a big sum: 284... munmap_chunk(): invalid pointer Printing details in output_metaSNV/cov/A0059.bam.cov.detail! Probably really good coverage, since variables overrun! That's a big sum: 291... munmap_chunk(): invalid pointer Printing details in output_metaSNV/cov/A0063.bam.cov.detail! Probably really good coverage, since variables overrun! That's a big sum: 141... munmap_chunk(): invalid pointer Failure in sample A0004.bamCall to /home/lilian/anaconda3/envs/metaSNV/share/metasnv-2.0.4/src/qaTools/qaCompute -c 10 -d -i /media/lilian/Elements/metaSNV/A0063.bam output_metaSNV/cov/A0063.bam.cov failed.(metaSNV)

What is this error? How could I solve it?

Thank you!!!