Handling deleted dbs on dataset reprocessing

metaspace2020 / metaspace

Cloud engine and platform for metabolite annotation for imaging mass spectrometry

https://metaspace2020.eu/

Apache License 2.0

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Closed lmacielvieira closed 10 months ago

lmacielvieira commented 10 months ago

Checking if db exists before starting annotation process, as deleted dbs were triggering errors if not checked #1406

1 - Annotate dataset with a custom db 2 - Delete custom db 3 - Reprocess dataset

sergii-mamedov commented 10 months ago

Maybe it makes sense to delete the previously deleted mol_db from self.ds.config['database_ids']? Because otherwise we will accumulate garbage.