metaspace2020 / metaspace

Cloud engine and platform for metabolite annotation for imaging mass spectrometry
https://metaspace2020.eu/
Apache License 2.0
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Fix bugs after migration on AWS #1483

Closed lmacielvieira closed 4 months ago

lmacielvieira commented 5 months ago

Description

Fixing found bugs is an unfinished task after moving to AWS Cloud

Change of config files and docker compose files for local environment and CircleCI

  1. Added new directories for new buckets in ./circleci/config.yml and docker/docker-compose.yml files
  2. Changed storage from localhost to minio in the config.docker.json and test_config.json files. Also, many unnecessary sections were removed from these files (ibm, ibm_cos, ibm_vpc, aws, aws_s3, ...)

Bug saving imzML browser files

We have returned the old code for saving numpy array on S3. For all datasets from January 19, it is necessary to delete all imzML browser files on S3, because all these files are invalid for the existing implementation.

Sort error for empty ES index

In the case of creating a new local environment, an error was observed when working with the site. Lucas fixed it.