several models in one go does not work

[MichaelSchulzMETNO]

Tried to run several models , comma separated, but that did not launch the idl jobs, just went through all possible commands. When using the first model from the list, it works for that model... must be a bug in the workup of several models, or?

[jgriesfeller]

You need to separate the models with a comma and without blanks (as noted in the help page) . Works. I use that very often. I admit that I do not have an explicit example in the wiki. That will change.

I will expand that to support also blank separated lists, but at the time I programmed that, I was not aware that argparse supports that as well.

[MichaelSchulzMETNO]

this one did not work as it should, commas and no blanks.... aerocom-tool-automation.py -v CHASER_t106_BASE,CHASER_re1_BASE,CAMchem_BASE,GEOS5_BASE,GEOS5_v3_GLOBASE,GEOSCHEMADJOINT_BASE,EMEP_rv48_BASE,GEOS-Chem_BASE,GFDL-AM3_BASE,GOCARTv5_BASE,HadGEM2-ES_BASE,HCMAQ_BASE,OsloCTM3.v2_BASE --notimeseries

[jgriesfeller]

the models have to be at the end. and the option before: aerocom-tool-automation.py -v --notimeseries CHASER_t106_BASE,CHASER_re1_BASE,CAMchem_BASE,GEOS5_BASE,GEOS5_v3_GLOBASE,GEOSCHEMADJOINT_BASE,EMEP_rv48_BASE,GEOS-Chem_BASE,GFDL-AM3_BASE,GOCARTv5_BASE,HadGEM2-ES_BASE,HCMAQ_BASE,OsloCTM3.v2_BASE

should work.

That's the difference between optional and mandatory parameters

[MichaelSchulzMETNO]

well not if you do one model !

Michael

On 3 Apr 2019, at 12:35, Jan Griesfeller notifications@github.com wrote:

the models have to be at the end. and the option before: aerocom-tool-automation.py -v --notimeseries CHASER_t106_BASE,CHASER_re1_BASE,CAMchem_BASE,GEOS5_BASE,GEOS5_v3_GLOBASE,GEOSCHEMADJOINT_BASE,EMEP_rv48_BASE,GEOS-Chem_BASE,GFDL-AM3_BASE,GOCARTv5_BASE,HadGEM2-ES_BASE,HCMAQ_BASE,OsloCTM3.v2_BASE

should work.

That's the difference between optional and mandatory parameters

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[jgriesfeller]

Hi Michael,

the line I wrote above worked for me, for all models. Did you load the module and do conda activate? jang@xvis-m3a:~$ module load aerocom/aerocom-tools4all jang@xvis-m3a:~$ conda activate (base) jang@xvis-m3a:~$ aerocom-tool-automation.py -v --debug --notimeseries CHASER_t106_BASE,CHASER_re1_BASE,CAMchem_BASE,GEOS5_BASE,GEOS5_v3_GLOBASE,GEOSCHEMADJOINT_BASE,EMEP_rv48_BASE,GEOS-Chem_BASE,GFDL-AM3_BASE,GOCARTv5_BASE,HadGEM2-ES_BASE,HCMAQ_BASE,OsloCTM3.v2_BASE

It also works with one model: (base) jang@xvis-m3a:~$ aerocom-tool-automation.py -v --debug --notimeseries GEOS5_v3_GLOBASE using tooldir /modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools Modeldir: /lustre/storeA/project/aerocom/aerocom-users-database/HTAP-PHASE-II/GEOS5_v3_GLOBASE/renamed File "/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/batching/jang/GEOS5_v3_GLOBASE_abs550aer_include.pro" written Year: 2010 WARNING: Variable "abs550bc" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "abs550dust" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "abs550pm1" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "abs550pm2p5" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "cheaqpso4" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "chegpso4" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "chepmsa" not supported by the aerocom-automation-tools Continuing with the other variables. File "/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/batching/jang/GEOS5_v3_GLOBASE_drybc_include.pro" written Year: 2010 WARNING: Variable "drydms" not supported by the aerocom-automation-tools Continuing with the other variables. File "/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/batching/jang/GEOS5_v3_GLOBASE_drydust_include.pro" written Year: 2010 WARNING: Variable "drymsa" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "dryoa" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "drypm10" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "drypm10dust" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "drypm10ss" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "drypm2p5" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "drypm2p5dust" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "drypm2p5ss" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "dryso2" not supported by the aerocom-automation-tools Continuing with the other variables. File "/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/batching/jang/GEOS5_v3_GLOBASE_dryso4_include.pro" written Year: 2010 File "/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/batching/jang/GEOS5_v3_GLOBASE_dryss_include.pro" written Year: 2010 File "/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/batching/jang/GEOS5_v3_GLOBASE_emibc_include.pro" written Year: 2010 File "/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/batching/jang/GEOS5_v3_GLOBASE_emidms_include.pro" written Year: 2010 File "/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/batching/jang/GEOS5_v3_GLOBASE_emidust_include.pro" written Year: 2010 File "/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/batching/jang/GEOS5_v3_GLOBASE_emioa_include.pro" written Year: 2010 WARNING: Variable "emipm10" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "emipm10dust" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "emipm10ss" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "emipm2p5" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "emipm2p5dust" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "emipm2p5ss" not supported by the aerocom-automation-tools Continuing with the other variables. File "/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/batching/jang/GEOS5_v3_GLOBASE_emiso2_include.pro" written Year: 2010 File "/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/batching/jang/GEOS5_v3_GLOBASE_emiso4_include.pro" written Year: 2010 File "/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/batching/jang/GEOS5_v3_GLOBASE_emiss_include.pro" written Year: 2010 File "/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/batching/jang/GEOS5_v3_GLOBASE_loadbc_include.pro" written Year: 2010 WARNING: Variable "loaddms" not supported by the aerocom-automation-tools Continuing with the other variables. File "/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/batching/jang/GEOS5_v3_GLOBASE_loaddust_include.pro" written Year: 2010 WARNING: Variable "loadoa" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "loadpm2p5" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "loadpm2p5dust" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "loadpm2p5ss" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "loadso2" not supported by the aerocom-automation-tools Continuing with the other variables. File "/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/batching/jang/GEOS5_v3_GLOBASE_loadso4_include.pro" written Year: 2010 File "/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/batching/jang/GEOS5_v3_GLOBASE_loadss_include.pro" written Year: 2010 File "/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/batching/jang/GEOS5_v3_GLOBASE_mmrbc_include.pro" written Year: 2010 File "/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/batching/jang/GEOS5_v3_GLOBASE_mmrdust_include.pro" written Year: 2010 WARNING: Variable "mmrmsa" not supported by the aerocom-automation-tools Continuing with the other variables. File "/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/batching/jang/GEOS5_v3_GLOBASE_mmroa_include.pro" written Year: 2010 WARNING: Variable "mmrpm10" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "mmrpm10bc" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "mmrpm10dust" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "mmrpm10oa" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "mmrpm10so4" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "mmrpm10ss" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "mmrpm2p5" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "mmrpm2p5bc" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "mmrpm2p5dust" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "mmrpm2p5oa" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "mmrpm2p5so4" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "mmrpm2p5ss" not supported by the aerocom-automation-tools Continuing with the other variables. File "/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/batching/jang/GEOS5_v3_GLOBASE_mmrso4_include.pro" written Year: 2010 File "/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/batching/jang/GEOS5_v3_GLOBASE_mmrss_include.pro" written Year: 2010 File "/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/batching/jang/GEOS5_v3_GLOBASE_od550aer_include.pro" written Year: 2010 File "/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/batching/jang/GEOS5_v3_GLOBASE_od550bc_include.pro" written Year: 2010 File "/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/batching/jang/GEOS5_v3_GLOBASE_od550dust_include.pro" written Year: 2010 File "/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/batching/jang/GEOS5_v3_GLOBASE_od550oa_include.pro" written Year: 2010 WARNING: Variable "od550pm1" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "od550pm2p5" not supported by the aerocom-automation-tools Continuing with the other variables. File "/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/batching/jang/GEOS5_v3_GLOBASE_od550so4_include.pro" written Year: 2010 WARNING: Variable "od550ss" not supported by the aerocom-automation-tools Continuing with the other variables. File "/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/batching/jang/GEOS5_v3_GLOBASE_sconcbc_include.pro" written Year: 2010 WARNING: Variable "sconcdms" not supported by the aerocom-automation-tools Continuing with the other variables. File "/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/batching/jang/GEOS5_v3_GLOBASE_sconcdust_include.pro" written Year: 2010 File "/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/batching/jang/GEOS5_v3_GLOBASE_sconcoa_include.pro" written Year: 2010 WARNING: Variable "sconcpm10bc" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "sconcpm10oa" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "sconcpm10so4" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "sconcpm2p5" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "sconcpm2p5bc" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "sconcpm2p5dust" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "sconcpm2p5oa" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "sconcpm2p5so4" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "sconcpm2p5ss" not supported by the aerocom-automation-tools Continuing with the other variables. File "/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/batching/jang/GEOS5_v3_GLOBASE_sconcso2_include.pro" written Year: 2010 File "/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/batching/jang/GEOS5_v3_GLOBASE_sconcso4_include.pro" written Year: 2010 File "/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/batching/jang/GEOS5_v3_GLOBASE_sconcss_include.pro" written Year: 2010 File "/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/batching/jang/GEOS5_v3_GLOBASE_vmrdms_include.pro" written Year: 2010 File "/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/batching/jang/GEOS5_v3_GLOBASE_vmrso2_include.pro" written Year: 2010 File "/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/batching/jang/GEOS5_v3_GLOBASE_wetbc_include.pro" written Year: 2010 WARNING: Variable "wetdms" not supported by the aerocom-automation-tools Continuing with the other variables. File "/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/batching/jang/GEOS5_v3_GLOBASE_wetdust_include.pro" written Year: 2010 WARNING: Variable "wetmsa" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "wetoa" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "wetpm10" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "wetpm10dust" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "wetpm10ss" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "wetpm2p5" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "wetpm2p5dust" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "wetpm2p5ss" not supported by the aerocom-automation-tools Continuing with the other variables. WARNING: Variable "wetso2" not supported by the aerocom-automation-tools Continuing with the other variables. File "/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/batching/jang/GEOS5_v3_GLOBASE_wetso4_include.pro" written Year: 2010 File "/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/batching/jang/GEOS5_v3_GLOBASE_wetss_include.pro" written Year: 2010 Parameters for subprocess.run: /bin/bash,/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/StartScreenWithLogging.sh,-d,-L,-m,-S,GEOS5_v3_GLOBASE_abs550aer_2010_xvis-m3a,/modules/xenial/user-apps/aerocom-IDL/8.5.1/idl85/bin/idl,-queue,-e,aerocom_main_1a2deb82_3ada_4813_9d2d_8904ad377a7e_xvis_m3a,modelin=['GEOS5_v3_GLOBASE'],yearin=['2010'],datayearin='0000',cwd:/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools /bin/bash,/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/StartScreenWithLogging.sh,-d,-L,-m,-S,GEOS5_v3_GLOBASE_drybc_2010_xvis-m3a,/modules/xenial/user-apps/aerocom-IDL/8.5.1/idl85/bin/idl,-queue,-e,aerocom_main_a48de656_a42f_4b25_9293_90d28000b78d_xvis_m3a,modelin=['GEOS5_v3_GLOBASE'],yearin=['2010'],datayearin='0000',cwd:/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools /bin/bash,/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/StartScreenWithLogging.sh,-d,-L,-m,-S,GEOS5_v3_GLOBASE_drydust_2010_xvis-m3a,/modules/xenial/user-apps/aerocom-IDL/8.5.1/idl85/bin/idl,-queue,-e,aerocom_main_233c1593_223c_4bb2_a4d1_3ad5e929ce50_xvis_m3a,modelin=['GEOS5_v3_GLOBASE'],yearin=['2010'],datayearin='0000',cwd:/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools /bin/bash,/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/StartScreenWithLogging.sh,-d,-L,-m,-S,GEOS5_v3_GLOBASE_dryso4_2010_xvis-m3a,/modules/xenial/user-apps/aerocom-IDL/8.5.1/idl85/bin/idl,-queue,-e,aerocom_main_0c9b6545_7ea5_4c16_a8f6_d6f80ba082f4_xvis_m3a,modelin=['GEOS5_v3_GLOBASE'],yearin=['2010'],datayearin='0000',cwd:/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools /bin/bash,/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/StartScreenWithLogging.sh,-d,-L,-m,-S,GEOS5_v3_GLOBASE_dryss_2010_xvis-m3a,/modules/xenial/user-apps/aerocom-IDL/8.5.1/idl85/bin/idl,-queue,-e,aerocom_main_93012d9f_ed4d_4157_9cc5_58d33fb5c59e_xvis_m3a,modelin=['GEOS5_v3_GLOBASE'],yearin=['2010'],datayearin='0000',cwd:/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools /bin/bash,/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/StartScreenWithLogging.sh,-d,-L,-m,-S,GEOS5_v3_GLOBASE_emibc_2010_xvis-m3a,/modules/xenial/user-apps/aerocom-IDL/8.5.1/idl85/bin/idl,-queue,-e,aerocom_main_03684ebe_43bb_4452_b144_9023ea7cf2e8_xvis_m3a,modelin=['GEOS5_v3_GLOBASE'],yearin=['2010'],datayearin='0000',cwd:/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools /bin/bash,/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/StartScreenWithLogging.sh,-d,-L,-m,-S,GEOS5_v3_GLOBASE_emidms_2010_xvis-m3a,/modules/xenial/user-apps/aerocom-IDL/8.5.1/idl85/bin/idl,-queue,-e,aerocom_main_045d68fc_b275_46ef_9f8d_14b1d77d4d48_xvis_m3a,modelin=['GEOS5_v3_GLOBASE'],yearin=['2010'],datayearin='0000',cwd:/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools /bin/bash,/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/StartScreenWithLogging.sh,-d,-L,-m,-S,GEOS5_v3_GLOBASE_emidust_2010_xvis-m3a,/modules/xenial/user-apps/aerocom-IDL/8.5.1/idl85/bin/idl,-queue,-e,aerocom_main_9c2ee5d9_02c0_465a_8b4b_60ab666712e7_xvis_m3a,modelin=['GEOS5_v3_GLOBASE'],yearin=['2010'],datayearin='0000',cwd:/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools /bin/bash,/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/StartScreenWithLogging.sh,-d,-L,-m,-S,GEOS5_v3_GLOBASE_emioa_2010_xvis-m3a,/modules/xenial/user-apps/aerocom-IDL/8.5.1/idl85/bin/idl,-queue,-e,aerocom_main_1d447be7_7195_4d56_a867_8cdcb6597a83_xvis_m3a,modelin=['GEOS5_v3_GLOBASE'],yearin=['2010'],datayearin='0000',cwd:/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools /bin/bash,/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/StartScreenWithLogging.sh,-d,-L,-m,-S,GEOS5_v3_GLOBASE_emiso2_2010_xvis-m3a,/modules/xenial/user-apps/aerocom-IDL/8.5.1/idl85/bin/idl,-queue,-e,aerocom_main_37d77fd0_11eb_495b_b7aa_7b10b5125f97_xvis_m3a,modelin=['GEOS5_v3_GLOBASE'],yearin=['2010'],datayearin='0000',cwd:/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools /bin/bash,/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools/StartScreenWithLogging.sh,-d,-L,-m,-S,GEOS5_v3_GLOBASE_emiso4_2010_xvis-m3a,/modules/xenial/user-apps/aerocom-IDL/8.5.1/idl85/bin/idl,-queue,-e,aerocom_main_fd1c5e25_dc54_4fb5_a379_835a3215ece2_xvis_m3a,modelin=['GEOS5_v3_GLOBASE'],yearin=['2010'],datayearin='0000',cwd:/modules/xenial/user-apps/aerocom/aerocom-tools4all/aerocom-tools 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Let's sort that out later today together.