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metrumresearchgroup / TFLGenerator

The TFL generator meta repository. This includes the GUI and TFL R packages as submodules and manages the shiny application deliverable.
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Metworx 20.12.2update #40

Open snemir opened 3 years ago

snemir commented 3 years ago

Adding changes per https://metworx.atlassian.net/wiki/spaces/~918206239/pages/296091845/rstudio+connect+python+investigation#app-level

snemir commented 3 years ago

Testing while working on https://metworx.atlassian.net/wiki/spaces/~648806656/pages/edit-v2/299204721

snemir commented 3 years ago

Output from test run of the setup_miniconda.sh script 

sergeyn@ip-10-192-41-37:~/TFLGenerator/script$ ./setup_miniconda.sh 
+ id -u
+ [ 1003 -ne 0 ]
+ id -un
+ echo Switching from sergeyn to root
Switching from sergeyn to root
+ exec sudo ./setup_miniconda.sh
+ id -u
+ [ 0 -ne 0 ]
+ export MINICONDA_VERSION=py37_4.8.3
+ export PYTHON_VERSION=3.7.7
+ curl -O https://repo.anaconda.com/miniconda/Miniconda3-py37_4.8.3-Linux-x86_64.sh
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 84.7M  100 84.7M    0     0   172M      0 --:--:-- --:--:-- --:--:--  172M
+ bash Miniconda3-py37_4.8.3-Linux-x86_64.sh -bp /opt/python/3.7.7
PREFIX=/opt/python/3.7.7
Unpacking payload ...
Collecting package metadata (current_repodata.json): done                                                                                                                                                                                                              
Solving environment: done

## Package Plan ##

  environment location: /opt/python/3.7.7

  added / updated specs:
    - _libgcc_mutex==0.1=main
    - ca-certificates==2020.1.1=0
    - certifi==2020.4.5.1=py37_0
    - cffi==1.14.0=py37he30daa8_1
    - chardet==3.0.4=py37_1003
    - conda-package-handling==1.6.1=py37h7b6447c_0
    - conda==4.8.3=py37_0
    - cryptography==2.9.2=py37h1ba5d50_0
    - idna==2.9=py_1
    - ld_impl_linux-64==2.33.1=h53a641e_7
    - libedit==3.1.20181209=hc058e9b_0
    - libffi==3.3=he6710b0_1
    - libgcc-ng==9.1.0=hdf63c60_0
    - libstdcxx-ng==9.1.0=hdf63c60_0
    - ncurses==6.2=he6710b0_1
    - openssl==1.1.1g=h7b6447c_0
    - pip==20.0.2=py37_3
    - pycosat==0.6.3=py37h7b6447c_0
    - pycparser==2.20=py_0
    - pyopenssl==19.1.0=py37_0
    - pysocks==1.7.1=py37_0
    - python==3.7.7=hcff3b4d_5
    - readline==8.0=h7b6447c_0
    - requests==2.23.0=py37_0
    - ruamel_yaml==0.15.87=py37h7b6447c_0
    - setuptools==46.4.0=py37_0
    - six==1.14.0=py37_0
    - sqlite==3.31.1=h62c20be_1
    - tk==8.6.8=hbc83047_0
    - tqdm==4.46.0=py_0
    - urllib3==1.25.8=py37_0
    - wheel==0.34.2=py37_0
    - xz==5.2.5=h7b6447c_0
    - yaml==0.1.7=had09818_2
    - zlib==1.2.11=h7b6447c_3

The following NEW packages will be INSTALLED:

  _libgcc_mutex      pkgs/main/linux-64::_libgcc_mutex-0.1-main
  ca-certificates    pkgs/main/linux-64::ca-certificates-2020.1.1-0
  certifi            pkgs/main/linux-64::certifi-2020.4.5.1-py37_0
  cffi               pkgs/main/linux-64::cffi-1.14.0-py37he30daa8_1
  chardet            pkgs/main/linux-64::chardet-3.0.4-py37_1003
  conda              pkgs/main/linux-64::conda-4.8.3-py37_0
  conda-package-han~ pkgs/main/linux-64::conda-package-handling-1.6.1-py37h7b6447c_0
  cryptography       pkgs/main/linux-64::cryptography-2.9.2-py37h1ba5d50_0
  idna               pkgs/main/noarch::idna-2.9-py_1
  ld_impl_linux-64   pkgs/main/linux-64::ld_impl_linux-64-2.33.1-h53a641e_7
  libedit            pkgs/main/linux-64::libedit-3.1.20181209-hc058e9b_0
  libffi             pkgs/main/linux-64::libffi-3.3-he6710b0_1
  libgcc-ng          pkgs/main/linux-64::libgcc-ng-9.1.0-hdf63c60_0
  libstdcxx-ng       pkgs/main/linux-64::libstdcxx-ng-9.1.0-hdf63c60_0
  ncurses            pkgs/main/linux-64::ncurses-6.2-he6710b0_1
  openssl            pkgs/main/linux-64::openssl-1.1.1g-h7b6447c_0
  pip                pkgs/main/linux-64::pip-20.0.2-py37_3
  pycosat            pkgs/main/linux-64::pycosat-0.6.3-py37h7b6447c_0
  pycparser          pkgs/main/noarch::pycparser-2.20-py_0
  pyopenssl          pkgs/main/linux-64::pyopenssl-19.1.0-py37_0
  pysocks            pkgs/main/linux-64::pysocks-1.7.1-py37_0
  python             pkgs/main/linux-64::python-3.7.7-hcff3b4d_5
  readline           pkgs/main/linux-64::readline-8.0-h7b6447c_0
  requests           pkgs/main/linux-64::requests-2.23.0-py37_0
  ruamel_yaml        pkgs/main/linux-64::ruamel_yaml-0.15.87-py37h7b6447c_0
  setuptools         pkgs/main/linux-64::setuptools-46.4.0-py37_0
  six                pkgs/main/linux-64::six-1.14.0-py37_0
  sqlite             pkgs/main/linux-64::sqlite-3.31.1-h62c20be_1
  tk                 pkgs/main/linux-64::tk-8.6.8-hbc83047_0
  tqdm               pkgs/main/noarch::tqdm-4.46.0-py_0
  urllib3            pkgs/main/linux-64::urllib3-1.25.8-py37_0
  wheel              pkgs/main/linux-64::wheel-0.34.2-py37_0
  xz                 pkgs/main/linux-64::xz-5.2.5-h7b6447c_0
  yaml               pkgs/main/linux-64::yaml-0.1.7-had09818_2
  zlib               pkgs/main/linux-64::zlib-1.2.11-h7b6447c_3

Preparing transaction: done
Executing transaction: done
installation finished.
+ /opt/python/3.7.7/bin/pip install virtualenv
WARNING: The directory '/data/home/sergeyn/.cache/pip' or its parent directory is not owned or is not writable by the current user. The cache has been disabled. Check the permissions and owner of that directory. If executing pip with sudo, you may want sudo's -H flag.
Collecting virtualenv
  Downloading virtualenv-20.4.7-py2.py3-none-any.whl (7.2 MB)
     |████████████████████████████████| 7.2 MB 20.5 MB/s 
Collecting filelock<4,>=3.0.0
  Downloading filelock-3.0.12-py3-none-any.whl (7.6 kB)
Collecting distlib<1,>=0.3.1
  Downloading distlib-0.3.2-py2.py3-none-any.whl (338 kB)
     |████████████████████████████████| 338 kB 84.8 MB/s 
Collecting appdirs<2,>=1.4.3
  Downloading appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
Requirement already satisfied: six<2,>=1.9.0 in /opt/python/3.7.7/lib/python3.7/site-packages (from virtualenv) (1.14.0)
Collecting importlib-metadata>=0.12; python_version < "3.8"
  Downloading importlib_metadata-4.5.0-py3-none-any.whl (17 kB)
Collecting typing-extensions>=3.6.4; python_version < "3.8"
  Downloading typing_extensions-3.10.0.0-py3-none-any.whl (26 kB)
Collecting zipp>=0.5
  Downloading zipp-3.4.1-py3-none-any.whl (5.2 kB)
Installing collected packages: filelock, distlib, appdirs, typing-extensions, zipp, importlib-metadata, virtualenv
Successfully installed appdirs-1.4.4 distlib-0.3.2 filelock-3.0.12 importlib-metadata-4.5.0 typing-extensions-3.10.0.0 virtualenv-20.4.7 zipp-3.4.1
+ rm -rf Miniconda3-py37_4.8.3-Linux-x86_64.sh
+ grep -qF Python /etc/rstudio-connect/rstudio-connect.gcfg
+ rs=1
+ [ 1 -ne 0 ]
+ cat
+ systemctl restart rstudio-connect
sergeyn@ip-10-192-41-37:~/TFLGenerator/script$ cat  /etc/rstudio-connect/rstudio-connect.gcfg
; RStudio Connect configuration file

[Server]
AuditLogFormat = json
EmailProvider = Sendmail
SenderEmail = no-reply-rstudio-connect@metrumrg.com
EmailSubjectPrefix = [RStudio-Connect]:
ViewerKiosk = false
HideEmailAddresses = false
MailAll = false
ContentTypeSniffing = false
Address = https://i-0b9074061ecf23bf9.metworx.com/rsconnect
DataDir = /data/rsconnect

[HTTP]
Listen = :3939
NoWarning = true

[Authentication]
Provider = password
Lifetime = 72h
Inactivity = 8h

[Licensing]
LicenseType = local
RemoteRetryFrequency = 10s
ExpirationEmail = true
ExpirationUIWarning = true

[Python]
Enabled = true
Executable = /opt/python/3.7.7/bin/python
sergeyn@ip-10-192-41-37:~/TFLGenerator/script$ /opt/python/3.7.7/bin/python --version 
Python 3.7.7
Dreznel commented 2 years ago

I'm going to deploy from this branch for the purpose of testing.