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metrumresearchgroup / bbi

Next generation modeling platform
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slurm / hpc option #303

Open ldbro0 opened 1 year ago

ldbro0 commented 1 year ago

Hi,

I wanted to see if there is a work around to get bbi / bbr functional using slurm or on hpc?

Thanks!

seth127 commented 1 year ago

Hi Logan, thanks for asking! Yes, bbi/bbr already have HPC capabilities via SGE (which is the default value of the .mode argument to bbr::submit_model()).

We also have Slurm integration on our roadmap for this year, actually. We are not actively working on it yet, but we're planning to get to it in the next 6-12 months.

We will be sure to update this issue once we start working on Slurm in earnest. In the mean time, let me know if you have any other questions.

ldbro0 commented 1 year ago

Thanks @seth127 ! In the interim are you could point bbi/bbr to a model to a nonmem installation on HPC and just run in interactive mode?

seth127 commented 1 year ago

Sure thing.

you could point bbi/bbr to a model to a nonmem installation on HPC and just run in interactive mode?

I'm not exactly sure what you mean by this. Could you give a little more context on what you're trying to do and where (i.e. what platform or OS) you're trying to actually execute the NONMEM model? Thanks.

marianklose commented 2 months ago

We also have Slurm integration on our roadmap for this year, actually. We are not actively working on it yet, but we're planning to get to it in the next 6-12 months.

Hi there, I am wondering if there are any news regarding the bbi/bbr integration with Slurm? I am currently trying to set up bbi/bbr on our cluster which uses Slurm as a workload manager. Thank you!

kyleam commented 2 months ago

Hi @marianklose, unfortunately we haven't started working on Slurm integration yet. Hopefully within the next few months.