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metrumresearchgroup / bbr

R interface for model and project management
https://metrumresearchgroup.github.io/bbr/
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Function to run NMTRAN on a model #705

Open barrettk opened 1 week ago

barrettk commented 1 week ago

Args

run_nmtran(
  .mod,
  .config_path = NULL,
  nmtran_exe = NULL, # Path to an NMTRAN executable. If NULL, will look for a bbi.yaml file in the same directory as the model.
  delete_on_exit = TRUE # Logical. If FALSE, don't delete the temporary folder containing the NMTRAN run.
)

Example

> .mod <- MOD1
> run_nmtran(.mod)

── Status ──────────────────────────────────────────────────────────────────────────────────────────────────

── NMTRAN successful ──

── Absolute Model Path ─────────────────────────────────────────────────────────────────────────────────────
• /data/Projects/package_dev/bbr/inst/model/nonmem/basic/1.ctl

── NMTRAN Specifications ───────────────────────────────────────────────────────────────────────────────────
• NMTRAN Executable: /opt/NONMEM/nm75/tr/NMTRAN.exe
• NONMEM Version: "nm75"
• Run Directory: /data/Projects/package_dev/bbr/nmtran_1_RtmpMzE7cx

── Output ──────────────────────────────────────────────────────────────────────────────────────────────────

 WARNINGS AND ERRORS (IF ANY) FOR PROBLEM    1

 (WARNING  2) NM-TRAN INFERS THAT THE DATA ARE POPULATION.

Note: Analytical 2nd Derivatives are constructed in FSUBS but are never used.
      You may insert $ABBR DERIV2=NO after the first $PROB to save FSUBS construction and compilation time

Process finished.

closes https://github.com/metrumresearchgroup/bbr/issues/650

barrettk commented 1 week ago

Previous PR: https://github.com/metrumresearchgroup/bbr/pull/652