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metrumresearchgroup / r-pharma-pkpd-2020

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Missing file azithro-single.cpp? #1

Open markbneal opened 2 years ago

markbneal commented 2 years ago

I downloaded mrgsolver from CRAN, and tried to run the examples here: https://github.com/metrumresearchgroup/r-pharma-pkpd-2020/blob/master/content/get-started.Rmd I modified this: mod <- mread("azithro-single", project = "model") ...to add my path: mod <- mread("azithro-single", project = "C:/Rpackages/mrgsolve/models") and no joy. Error: the model file azithro-single.cpp does not exist. azithro-single.cpp is missing.

I found this file, which looks similar, but is not exactly the same, and used it instead. https://raw.githubusercontent.com/metrumresearchgroup/page-2018-mrgsolve/master/model/azithro.cpp

markbneal commented 2 years ago

Some other items that make it difficult to run the examples. A link for data provides a csv, but it does not have DUR and CMT fields, which are later required. data <- readr::read_csv("C:/Rpackages/mrgsolve/data/Simulated_DatasetMeropenem.csv", na = '.') Also the C ID column needs to be renamed to ID, and the RATE NAs need to be changed to zero?

I couldn't find meropenum_pk.cpp, but did find meropenum.cpp (https://raw.githubusercontent.com/metrumresearchgroup/page-2018-mrgsolve/master/model/meropenem.cpp). Downloading that to the relevant directory reads ok, but combining with the data fails, as CMT is missing. 


Error: event record cmt must be between 1 and 2: 
 ID: 1, row: 1, cmt: 0, evid: 1