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mevers / NCI_ChIP-seq

Systematic optimization of parameters for ChIP-Seq peak calling algorithms using simulated short-read sequencing data
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R package actuar on GDUserv #4

Closed mevers closed 7 years ago

mevers commented 7 years ago

GDUserv runs R version

R version 3.1.0 (2014-04-10) -- "Spring Dance"
Copyright (C) 2014 The R Foundation for Statistical Computing
Platform: x86_64-unknown-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under the terms of the
GNU General Public License versions 2 or 3.
For more information about these matters see
http://www.gnu.org/licenses/.

Unfortunately, R version 3.1.0 does not support the most recent version 2.1.0 of R package actuar, which is required for scripts/simulate_reads.R. This will break the workflow.

Workaround: It seems that actuar version 1.1.10 installs on R 3.1.0. Install manually and locally using

install.packages("actuar_1.1-10.tar.gz");
skurscheid commented 7 years ago

good to see that it does work after all!

skurscheid commented 7 years ago

see above for fix