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meyer-lab-cshl / plinkQC

R package for quality control of plink genetic datasets
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Alleles swapped in cleanData #20

Closed evagradovich closed 4 years ago

evagradovich commented 4 years ago

No --keep-allele-order in cleanData plink command - results in alleles swapping

HannahVMeyer commented 4 years ago

please provide some context to this issue, show an example, state if you believe this is a bug or if this would be something you'd suggest to add as feature

HannahVMeyer commented 4 years ago

Closing this now as no response