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meyer-lab-cshl / plinkQC

R package for quality control of plink genetic datasets
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1000 Genomes phase 3 links have changed #49

Open mxhm opened 2 years ago

mxhm commented 2 years ago

Hi, thanks for this package!

I followed the ancestry reference data preparation here: https://meyer-lab-cshl.github.io/plinkQC/articles/Genomes1000.html

The dropbox urls have changed, updated links are these:

pgen=https://www.dropbox.com/s/y6ytfoybz48dc0u/all_phase3.pgen.zst?dl=1
pvar=https://www.dropbox.com/s/odlexvo8fummcvt/all_phase3.pvar.zst?dl=1
sample=https://www.dropbox.com/s/6ppo144ikdzery5/phase3_corrected.psam?dl=1