search

meyer-lab / DDMC

Clusters phosphoproteomics data based on a combination of the sequence information and abundance changes over conditions.
https://asmlab.org
1 stars 1 forks source link

Make DDMC return validated substrates #523

Closed mcreixell closed 2 years ago

mcreixell commented 2 years ago

Again, something the reviewers didn't ask for but after spending many hours interpreting DDMC results, I think adding a method within DDMC that returns a list of validated substrates included in a cluster of an upstream kinase could be very helpful. Returning all kinases and phosphatases within each cluster could also be informative. This should be very easy to do. I think I could write this while you review the manuscript or we can just add this after re-submitting @aarmey

aarmey commented 2 years ago

Hmm... if you think it would be useful to you then I agree. Otherwise, many other things could use your attention.