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meyer-lab / FcRegression.jl

Study Fc antibody dynamics using a multivalent binding model
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Organizing and expanding out fitting data #350

Open aarmey opened 3 years ago

aarmey commented 3 years ago

I've added a couple ITP conditions from this paper, but it likely has additional experiments we could use for ITP and B cells: https://www.sciencedirect.com/science/article/pii/S1074761311004985

Also, I think it'd be helpful to go through the depletion model files, and provide a comment on each line for the paper and figure each training point came from. This information will also need to be provided as a table in the manuscript for the ITP and melanoma models, so it'd be helpful to start assembling that. @stephendl102 perhaps you can start on this?

aarmey commented 3 years ago

In the manuscript, I think the columns would be: (1) the IgG applied, (2) the background (e.g., a knockout or cell type depletion), (3) percent depletion of the target, (4) reference and figure number.

cyrillustan commented 3 years ago

@stephendl102 I think the only thing new here is "reference and figure number". Maybe we can just add those to the csv file, and check it is compatible with the code.

stephendl102 commented 3 years ago

@aarmey @cyrillustan Yes, I will work on this today