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meyer-lab / tHMM

A general Python framework for using hidden Markov models on binary trees or cell lineage trees.
https://asmlab.org
MIT License
9 stars 1 forks source link

Keeping notes on the mathematics #15

Closed shak360 closed 5 years ago

shak360 commented 5 years ago

https://www.overleaf.com/4613729765tqmsjgdpxrgg

Here is a \LaTeX project I started on Overleaf, which will need an Overleaf account, where we can keep all our notes on the mathematics and other written down aspects of our project. This will also make sure we have consistent notation, and an easier way to represent math if we need to move them to slides or figures later. I guess we can start with a review on HMMs and move from there.

shak360 commented 5 years ago

https://www.overleaf.com/read/zknhqrvbmwxx (to view)

https://www.overleaf.com/4613729765tqmsjgdpxrgg (to write)

I guess we can just start adding sections and assigning people to topics like conditional probability, Bayesian networks, HMMs, EM, etc. I already added an intro on Maximum Likelihood Estimation (which may have typos) and annotated it with some notes on how to write LaTeX and some intro to probability. This wouldn't just be math, but a description of algorithms, and just general notes and answers to questions. Maybe we can use this for assignments to turn for 177A as well, i.e. writing figures, making diagrams, writing elevator pitches, other writing assignments, etc.

shak360 commented 5 years ago

Closing this and moving to #31.