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meyer-lab / tHMM

A general Python framework for using hidden Markov models on binary trees or cell lineage trees.
https://asmlab.org
MIT License
10 stars 1 forks source link

Use SLSQP throughout #948

Closed aarmey closed 2 years ago

aarmey commented 2 years ago

This should be a little faster and simpler.

codecov[bot] commented 2 years ago

Codecov Report

Merging #948 (fc1ac79) into master (67901c7) will decrease coverage by 0.07%. The diff coverage is 20.00%.

@@            Coverage Diff             @@
##           master     #948      +/-   ##
==========================================
- Coverage   80.92%   80.85%   -0.08%     
==========================================
  Files          28       28              
  Lines        2202     2199       -3     
==========================================
- Hits         1782     1778       -4     
- Misses        420      421       +1
Flag Coverage Δ
unittests 80.85% <20.00%> (-0.08%) :arrow_down:

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Impacted Files Coverage Δ
lineage/states/stateCommon.py 67.56% <20.00%> (-2.57%) :arrow_down:

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