Closed Farnazmdi closed 1 year ago
Merging #957 (9dd5c0a) into master (ba1e50d) will decrease coverage by
0.41%
. The diff coverage is62.06%
.:exclamation: Current head 9dd5c0a differs from pull request most recent head 335a2cb. Consider uploading reports for the commit 335a2cb to get more accurate results
@@ Coverage Diff @@
## master #957 +/- ##
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- Coverage 75.46% 75.05% -0.41%
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Files 26 26
Lines 2164 2169 +5
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- Hits 1633 1628 -5
- Misses 531 541 +10
Flag | Coverage Δ | |
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unittests | 75.05% <62.06%> (-0.41%) |
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Impacted Files | Coverage Δ | |
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lineage/BaumWelch.py | 89.24% <ø> (ø) |
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lineage/plotTree.py | 0.00% <0.00%> (ø) |
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lineage/crossval.py | 82.50% <68.18%> (-17.50%) |
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lineage/states/stateCommon.py | 100.00% <100.00%> (ø) |
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lineage/tests/test_CrossVal.py | 100.00% <100.00%> (ø) |
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lineage/Analyze.py | 92.78% <0.00%> (-1.04%) |
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@Farnazmdi is this something that should eventually be merged or deleted?
There is an underflow error here in calculating the gamma likelihood when building figure 21 (cross validation for experimental data of lapatinib and gemcittabine):
outt -= np.sum(gammas[i][jidx] * np.log(gamP))
FloatingPointError: underflow encountered in multiply
in gamma_LL line 65.
@aarmey Do you have an idea about how to address this? It is already in log format..
I made a small adjustment that I think will fix the issue. Let me know if it still errors.
Thank you, it is fixed.
This should be ready to merge.
Great. Merging.