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meyer-lab / tHMM

A general Python framework for using hidden Markov models on binary trees or cell lineage trees.
https://asmlab.org
MIT License
9 stars 1 forks source link

Refactor tHMM to enable tHMM typing #960

Closed aarmey closed 2 years ago

codecov[bot] commented 2 years ago

Codecov Report

Merging #960 (354b26d) into master (ff27f4d) will increase coverage by 0.55%. The diff coverage is 100.00%.

@@            Coverage Diff             @@
##           master     #960      +/-   ##
==========================================
+ Coverage   82.00%   82.56%   +0.55%     
==========================================
  Files          28       28              
  Lines        2251     2231      -20     
==========================================
- Hits         1846     1842       -4     
+ Misses        405      389      -16
Flag Coverage Δ
unittests 82.56% <100.00%> (+0.55%) :arrow_up:

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Impacted Files Coverage Δ
lineage/LineageTree.py 100.00% <ø> (ø)
lineage/Analyze.py 94.17% <100.00%> (+8.00%) :arrow_up:
lineage/BaumWelch.py 86.79% <100.00%> (+0.12%) :arrow_up:
lineage/DownwardRecursion.py 100.00% <100.00%> (ø)
lineage/UpwardRecursion.py 100.00% <100.00%> (ø)
lineage/Viterbi.py 100.00% <100.00%> (ø)
lineage/states/stateCommon.py 80.00% <100.00%> (+9.72%) :arrow_up:
lineage/tHMM.py 96.70% <100.00%> (-0.30%) :arrow_down:
lineage/tests/test_BaumWelch.py 100.00% <100.00%> (ø)
lineage/tests/test_StateEstimation.py 100.00% <100.00%> (ø)
... and 1 more

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