Bump joblib from 1.1.0 to 1.2.0

Bumps joblib from 1.1.0 to 1.2.0.

Changelog

Release 1.2.0

Fix a security issue where eval(pre_dispatch) could potentially run arbitrary code. Now only basic numerics are supported. joblib/joblib#1327

Make sure that joblib works even when multiprocessing is not available, for instance with Pyodide joblib/joblib#1256

Avoid unnecessary warnings when workers and main process delete the temporary memmap folder contents concurrently. joblib/joblib#1263

Fix memory alignment bug for pickles containing numpy arrays. This is especially important when loading the pickle with mmap_mode != None as the resulting numpy.memmap object would not be able to correct the misalignment without performing a memory copy. This bug would cause invalid computation and segmentation faults with native code that would directly access the underlying data buffer of a numpy array, for instance C/C++/Cython code compiled with older GCC versions or some old OpenBLAS written in platform specific assembly. joblib/joblib#1254

Vendor cloudpickle 2.2.0 which adds support for PyPy 3.8+.

Vendor loky 3.3.0 which fixes several bugs including:

robustly forcibly terminating worker processes in case of a crash (joblib/joblib#1269);

avoiding leaking worker processes in case of nested loky parallel calls;

reliability spawn the correct number of reusable workers.

Commits

5991350 Release 1.2.0
3fa2188 MAINT cleanup numpy warnings related to np.matrix in tests (#1340)
cea26ff CI test the future loky-3.3.0 branch (#1338)
8aca6f4 MAINT: remove pytest.warns(None) warnings in pytest 7 (#1264)
067ed4f XFAIL test_child_raises_parent_exits_cleanly with multiprocessing (#1339)
ac4ebd5 MAINT add back pytest warnings plugin (#1337)
a23427d Test child raises parent exits cleanly more reliable on macos (#1335)
ac09691 [MAINT] various test updates (#1334)
4a314b1 Vendor loky 3.2.0 (#1333)
bdf47e9 Make test_parallel_with_interactively_defined_functions_default_backend timeo...
Additional commits viewable in compare view

Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting @dependabot rebase.

Dependabot commands and options

You can trigger Dependabot actions by commenting on this PR: - `@dependabot rebase` will rebase this PR - `@dependabot recreate` will recreate this PR, overwriting any edits that have been made to it - `@dependabot merge` will merge this PR after your CI passes on it - `@dependabot squash and merge` will squash and merge this PR after your CI passes on it - `@dependabot cancel merge` will cancel a previously requested merge and block automerging - `@dependabot reopen` will reopen this PR if it is closed - `@dependabot close` will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually - `@dependabot ignore this major version` will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this minor version` will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this dependency` will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself) - `@dependabot use these labels` will set the current labels as the default for future PRs for this repo and language - `@dependabot use these reviewers` will set the current reviewers as the default for future PRs for this repo and language - `@dependabot use these assignees` will set the current assignees as the default for future PRs for this repo and language - `@dependabot use this milestone` will set the current milestone as the default for future PRs for this repo and language You can disable automated security fix PRs for this repo from the [Security Alerts page](https://github.com/meyer-lab/tHMM/network/alerts).

meyer-lab / tHMM

Bump joblib from 1.1.0 to 1.2.0 #969

Release 1.2.0

Codecov Report