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meyer-lab / tHMM

A general Python framework for using hidden Markov models on binary trees or cell lineage trees.
https://asmlab.org
MIT License
9 stars 1 forks source link

No numba and various cleanup #974

Closed aarmey closed 1 year ago

codecov[bot] commented 1 year ago

Codecov Report

Merging #974 (181c2c4) into master (febc128) will increase coverage by 0.48%. The diff coverage is 72.72%.

@@            Coverage Diff             @@
##           master     #974      +/-   ##
==========================================
+ Coverage   74.97%   75.46%   +0.48%     
==========================================
  Files          26       26              
  Lines        2174     2164      -10     
==========================================
+ Hits         1630     1633       +3     
+ Misses        544      531      -13
Flag Coverage Δ
unittests 75.46% <72.72%> (+0.48%) :arrow_up:

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files Coverage Δ
lineage/plotTree.py 0.00% <0.00%> (ø)
lineage/tests/test_CrossVal.py 100.00% <ø> (ø)
lineage/Analyze.py 93.81% <100.00%> (-0.07%) :arrow_down:
lineage/BaumWelch.py 89.24% <100.00%> (ø)
lineage/CellVar.py 98.79% <100.00%> (ø)
lineage/Viterbi.py 100.00% <100.00%> (ø)
lineage/crossval.py 100.00% <100.00%> (ø)
lineage/states/stateCommon.py 100.00% <100.00%> (+20.00%) :arrow_up:
lineage/tHMM.py 96.73% <100.00%> (ø)

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