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meyer-lab / tHMM

A general Python framework for using hidden Markov models on binary trees or cell lineage trees.
https://asmlab.org
MIT License
10 stars 1 forks source link

Move state handling to the lineage #993

Closed aarmey closed 7 months ago

codecov[bot] commented 7 months ago

Codecov Report

Attention: Patch coverage is 51.72414% with 14 lines in your changes are missing coverage. Please review.

Project coverage is 68.62%. Comparing base (9f37cb0) to head (3eaa65a).

Files Patch % Lines
lineage/plotTree.py 0.00% 9 Missing :warning:
lineage/Analyze.py 42.85% 4 Missing :warning:
lineage/LineageInputOutput.py 66.66% 1 Missing :warning:
Additional details and impacted files ```diff @@ Coverage Diff @@ ## master #993 +/- ## ========================================== - Coverage 68.92% 68.62% -0.31% ========================================== Files 28 28 Lines 1931 1944 +13 ========================================== + Hits 1331 1334 +3 - Misses 600 610 +10 ``` | [Flag](https://app.codecov.io/gh/meyer-lab/tHMM/pull/993/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=meyer-lab) | Coverage Δ | | |---|---|---| | [unittests](https://app.codecov.io/gh/meyer-lab/tHMM/pull/993/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=meyer-lab) | `68.62% <51.72%> (-0.31%)` | :arrow_down: | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=meyer-lab#carryforward-flags-in-the-pull-request-comment) to find out more.

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