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meyer-lab / tHMM

A general Python framework for using hidden Markov models on binary trees or cell lineage trees.
https://asmlab.org
MIT License
9 stars 1 forks source link

Merge some of the gamma distribution fitting #994

Closed aarmey closed 6 months ago

codecov[bot] commented 6 months ago

Codecov Report

Attention: Patch coverage is 82.90598% with 20 lines in your changes are missing coverage. Please review.

Project coverage is 69.30%. Comparing base (ca8216b) to head (9bb2110).

Files Patch % Lines
lineage/HMM/E_step.py 47.36% 10 Missing :warning:
lineage/states/StateDistributionGamma.py 83.33% 8 Missing :warning:
lineage/Analyze.py 80.00% 1 Missing :warning:
lineage/BaumWelch.py 91.66% 1 Missing :warning:
Additional details and impacted files ```diff @@ Coverage Diff @@ ## master #994 +/- ## ========================================== - Coverage 72.82% 69.30% -3.52% ========================================== Files 28 28 Lines 1950 1919 -31 ========================================== - Hits 1420 1330 -90 - Misses 530 589 +59 ``` | [Flag](https://app.codecov.io/gh/meyer-lab/tHMM/pull/994/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=meyer-lab) | Coverage Δ | | |---|---|---| | [unittests](https://app.codecov.io/gh/meyer-lab/tHMM/pull/994/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=meyer-lab) | `69.30% <82.90%> (-3.52%)` | :arrow_down: | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=meyer-lab#carryforward-flags-in-the-pull-request-comment) to find out more.

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