search

mfarragher / obsidiantools

Obsidian tools - a Python package for analysing an Obsidian.md vault
Other
402 stars 28 forks source link

Crash on _get_wikilinks_index #19

Closed louis030195 closed 1 year ago

louis030195 commented 1 year ago

Hey, I'm not sure if this is related to any existing issue, maybe https://github.com/mfarragher/obsidiantools/issues/18 ?

Traceback (most recent call last):
  File "semantic/semantic_search_api.py", line 42, in <module>
    vault = otools.Vault(wkd).connect().gather()
  File "/Users/louisbeaumont/Documents/brain/.obsidian/plugins/obsidian-ava/env/lib/python3.8/site-packages/obsidiantools/api.py", line 228, in connect
    wiki_link_map = self._get_wikilinks_index()
  File "/Users/louisbeaumont/Documents/brain/.obsidian/plugins/obsidian-ava/env/lib/python3.8/site-packages/obsidiantools/api.py", line 508, in _get_wikilinks_index
    return {k: get_wikilinks(self._dirpath / v)
  File "/Users/louisbeaumont/Documents/brain/.obsidian/plugins/obsidian-ava/env/lib/python3.8/site-packages/obsidiantools/api.py", line 508, in <dictcomp>
    return {k: get_wikilinks(self._dirpath / v)
  File "/Users/louisbeaumont/Documents/brain/.obsidian/plugins/obsidian-ava/env/lib/python3.8/site-packages/obsidiantools/md_utils.py", line 106, in get_wikilinks
    src_txt = _get_source_text_from_md_file(filepath, remove_code=True)
  File "/Users/louisbeaumont/Documents/brain/.obsidian/plugins/obsidian-ava/env/lib/python3.8/site-packages/obsidiantools/md_utils.py", line 288, in _get_source_text_from_md_file
    html = _get_html_from_md_file(
  File "/Users/louisbeaumont/Documents/brain/.obsidian/plugins/obsidian-ava/env/lib/python3.8/site-packages/obsidiantools/md_utils.py", line 268, in _get_html_from_md_file
    _, content = _get_md_front_matter_and_content(
  File "/Users/louisbeaumont/Documents/brain/.obsidian/plugins/obsidian-ava/env/lib/python3.8/site-packages/obsidiantools/md_utils.py", line 249, in _get_md_front_matter_and_content
    return frontmatter.parse(file_string)
  File "/Users/louisbeaumont/Documents/brain/.obsidian/plugins/obsidian-ava/env/lib/python3.8/site-packages/frontmatter/__init__.py", line 82, in parse
    fm = handler.load(fm)
  File "/Users/louisbeaumont/Documents/brain/.obsidian/plugins/obsidian-ava/env/lib/python3.8/site-packages/frontmatter/default_handlers.py", line 238, in load
    return yaml.load(fm, **kwargs)
  File "/Users/louisbeaumont/Documents/brain/.obsidian/plugins/obsidian-ava/env/lib/python3.8/site-packages/yaml/__init__.py", line 81, in load
    return loader.get_single_data()
  File "/Users/louisbeaumont/Documents/brain/.obsidian/plugins/obsidian-ava/env/lib/python3.8/site-packages/yaml/constructor.py", line 49, in get_single_data
    node = self.get_single_node()
  File "/Users/louisbeaumont/Documents/brain/.obsidian/plugins/obsidian-ava/env/lib/python3.8/site-packages/yaml/composer.py", line 36, in get_single_node
    document = self.compose_document()
  File "/Users/louisbeaumont/Documents/brain/.obsidian/plugins/obsidian-ava/env/lib/python3.8/site-packages/yaml/composer.py", line 55, in compose_document
    node = self.compose_node(None, None)
  File "/Users/louisbeaumont/Documents/brain/.obsidian/plugins/obsidian-ava/env/lib/python3.8/site-packages/yaml/composer.py", line 84, in compose_node
    node = self.compose_mapping_node(anchor)
  File "/Users/louisbeaumont/Documents/brain/.obsidian/plugins/obsidian-ava/env/lib/python3.8/site-packages/yaml/composer.py", line 133, in compose_mapping_node
    item_value = self.compose_node(node, item_key)
  File "/Users/louisbeaumont/Documents/brain/.obsidian/plugins/obsidian-ava/env/lib/python3.8/site-packages/yaml/composer.py", line 82, in compose_node
    node = self.compose_sequence_node(anchor)
  File "/Users/louisbeaumont/Documents/brain/.obsidian/plugins/obsidian-ava/env/lib/python3.8/site-packages/yaml/composer.py", line 110, in compose_sequence_node
    while not self.check_event(SequenceEndEvent):
  File "/Users/louisbeaumont/Documents/brain/.obsidian/plugins/obsidian-ava/env/lib/python3.8/site-packages/yaml/parser.py", line 98, in check_event
    self.current_event = self.state()
  File "/Users/louisbeaumont/Documents/brain/.obsidian/plugins/obsidian-ava/env/lib/python3.8/site-packages/yaml/parser.py", line 483, in parse_flow_sequence_entry
    raise ParserError("while parsing a flow sequence", self.marks[-1],
yaml.parser.ParserError: while parsing a flow sequence
  in "<unicode string>", line 3, column 10:
    aliases: [researchgate.net,(PDF) the Capa ... 
             ^
expected ',' or ']', but got '?'
  in "<unicode string>", line 3, column 98:
     ...  There Any Limit to Human Memory?]
louis030195 commented 1 year ago

continuing in the other issue