mfitzp / pathomx

Workflow based scientific analysis built on Python
https://www.mfitzp.com/tools/pathomx/
GNU General Public License v3.0
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Problem to run pathomx from command line #22

Closed pbandyop closed 10 years ago

pbandyop commented 10 years ago

Hi, I have successfully set up the dependencies required to set up the development environment. Thanks for your updated documentation in http://docs.pathomx.org/en/latest/dev_install.html#macos-x Now, I forked the project and cloned into my local computer. When I run python -m pathomx.Pathomx I get the following error: /Library/Python/2.7/site-packages/pandas/io/excel.py:626: UserWarning: Installed openpyxl is not supported at this time. Use >=1.6.1 and <2.0.0. .format(openpyxl_compat.start_ver, openpyxl_compat.stop_ver)) Traceback (most recent call last): ................. .................. from .version import VERSION_STRING ImportError: No module named version Any ideas?

mfitzp commented 10 years ago

Nearly there... You can fix this by syncing your fork to the main master branch. It appears I made a duff commit right at the point you forked. The instructions for syncing your fork are here: https://help.github.com/articles/syncing-a-fork

Note that you also need to add the pathomx/pathomx repo as 'upstream' which is described here: https://help.github.com/articles/configuring-a-remote-for-a-fork