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mfruzan / CoreDetector

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CoreDetector for large repeat unmasked genome? #3

Open bijendrabio opened 8 months ago

bijendrabio commented 8 months ago

Hello, Curious if you have tested CoreDetector using repeat unmasked version of large plant genomes?

Kind regards, B

RussellAndrewEdson commented 7 months ago

Hi B, sorry for the late reply!

Mario reckons that for genome sizes up to 3GB they tested unmasked and that worked well. For a wheat genome, only repeat-masked has been tested (and in that case, he recommends splitting up the wheat genome into 3GB chunks--e.g., 1A, 1B and 1D to one chunk, and so on--and that should work well). At the end you can concatenate the results of chunks into one single MAF file.