search

mfumagalli / ngsPopGen

Population genetics analyses from NGS data
GNU General Public License v3.0
25 stars 7 forks source link

Order of samples in covariance matrix #1

Closed atcg closed 10 years ago

atcg commented 10 years ago

Greetings,

I've got a probably obvious question that I can't find an answer to after some digging. When I calculate the genotype posterior probabilities with ANGSD and feed them into ngsCovar, I get a matrix of numbers where the number of columns and rows equals the number of samples. Am I right to assume that column/row #1 corresponds to the first bam file in the list of bam files that I input into ANGSD, column/row #2 corresponds to the second bam file, etc...?

Thanks so much, Evan

fgvieira commented 10 years ago

Yes, the sample order is the same as the list of bam files used as input into ANGSD. cheers,