Closed madzafv closed 3 years ago
Hi Madza! I think you missed the -nsites option. But more importantly, why are you using ngsStat? Most of these statistics are much better implemented in ANGSD so I encourage you to use ANGSD instead of ngsStat.
Hummm I get another error when I use the -nsites
-> Possible error reading SFS, binary file might be broken...
Yeah, I'm using angsd for most stuff, but it doesn't calc het in a window does it? Or fixed sites between 2pops? Guess I have to write something to do it... thxs!
Usually you get that error when the -nind option is in conflict with the actual dimensions of .saf files. Did you fold the data? ngsTools doesn't really support folded data. Let me know.
closed since no further requests for made
Hello, I'm trying to use ngsStat by doing:
./ngsStat -npop 1 -postfiles file.saf -nind 11 -outfile file.stat
where my .saf (out of angsd) looks like:but I'm getting the error:
Floating point exception (core dumped)
Any ideas what could be wrong?