search

mgalardini / pyseer

SEER, reimplemented in python 🐍🔮
http://pyseer.readthedocs.io
Apache License 2.0
109 stars 27 forks source link

Change the way pre-filtered variants are reported #147

Closed mgalardini closed 3 years ago

mgalardini commented 3 years ago

For fixed effects and LMM we are now printing the pre-filtered variants as well. Not sure what to do for --wg, so for now we are not reporting them when doing a whole pangenome regression.

johnlees commented 3 years ago

A good change/fix. I think we can leave --wg alone as it's a very different mode, and doesn't really pre-filter and print in the same way.