Add shape parameter to csr_matrix in load_all_vars (#151)

mgalardini / pyseer

SEER, reimplemented in python 🐍🔮

http://pyseer.readthedocs.io

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Add shape parameter to csr_matrix in load_all_vars (#151) #152

Closed julibeg closed 3 years ago

julibeg commented 3 years ago

Don't merge yet. It looks like this throws a different error when running with a VCF (I encountered the original bug with .Rtab files). Gonna look into it.

julibeg commented 3 years ago

The problem is that I used len(sample_order), which is only present when running with --pres; len(all_strains) works in any case. Good to go now.

julibeg commented 3 years ago

version has been bumped