Closed AlperYurtseven closed 1 year ago
From the documentation:
When interpreting this plot, check that it is well controlled at low p-values and doesn’t show any large ‘shelves’ symptomatic of poorly controlled confounding population structure. Although this plot is far above the null (as indeed, there are many k-mers associated with penicillin resistance), the p-values up to 0.01 are as expected which is what we’re after.
These look ok to me
Hi, After following the tutorial, we have ended up having qq plots like this for our data. What can we interpret from these two graphs?
Thank you in advance