mgalardini
commented
3 weeks ago Hi, can you share the command you are using and the output of ls output?
Open chaseschwarz opened 3 weeks ago
mgalardini
commented
3 weeks ago Hi, can you share the command you are using and the output of ls output?
Hi, I am attempting the prediction tutorial but am running into an issue after the first line. I believe I setup everything as indicated by installing pyseer through conda and then using un-taring the folder to have all necessary files. But I am getting this error: " FileNotFoundError: [Errno 2] No such file or directory: 'output/ma_snps.npz'". Here is the full traceback if helpful: " Traceback (most recent call last): File "/home/chaseps2/miniconda3/envs/pyseer/bin/pyseer", line 10, in
sys.exit(main())
File "/home/chaseps2/miniconda3/envs/pyseer/lib/python3.10/site-packages/pyseer/main.py", line 623, in main
scipy.sparse.save_npz(options.save_vars + ".npz", all_vars)
File "/home/chaseps2/miniconda3/envs/pyseer/lib/python3.10/site-packages/scipy/sparse/_matrix_io.py", line 75, in save_npz
np.savez_compressed(file, *arrays_dict)
File "/home/chaseps2/miniconda3/envs/pyseer/lib/python3.10/site-packages/numpy/lib/npyio.py", line 710, in savez_compressed
_savez(file, args, kwds, True)
File "/home/chaseps2/miniconda3/envs/pyseer/lib/python3.10/site-packages/numpy/lib/npyio.py", line 736, in _savez
zipf = zipfile_factory(file, mode="w", compression=compression)
File "/home/chaseps2/miniconda3/envs/pyseer/lib/python3.10/site-packages/numpy/lib/npyio.py", line 103, in zipfile_factory
return zipfile.ZipFile(file, args, **kwargs)
File "/home/chaseps2/miniconda3/envs/pyseer/lib/python3.10/zipfile.py", line 1253, in init
self.fp = io.open(file, filemode)
FileNotFoundError: [Errno 2] No such file or directory: 'output/ma_snps.npz'"
Thank you!